Package: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 172 Depends: libc6 (>= 2.34), perl Filename: i386/barriers_1.8.1-1_i386.deb Size: 64592 MD5sum: 9a263f68ec58f28d15bfe930c97dfe24 SHA1: 2979754431bd8b543d412c00e2c1594d296919f4 SHA256: bcdc966bc4abc0284553acc6922316f3dae31ace7c73758528852ecff09b15b3 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 162 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 61796 MD5sum: d21b5b73583c42e2a84a280bcac47802 SHA1: d4ad089f3f9ebbe6d18d1a21edca104846071774 SHA256: 99133c05bd5145ec60c3b10fe83d633e8ad1bd3be6b1b1b94416bdbeada90f58 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 147 Depends: barriers (= 1.8.1-1) Filename: i386/barriers-dbgsym_1.8.1-1_i386.deb Size: 126932 MD5sum: 34efdd87245250abb545417a1c044586 SHA1: 5ba54d628967deca8c82a19ac20e49d038359f39 SHA256: a3a20c0969ed3a0c0612f2d09e7057019ef4db064a59bee5884890dc5fc3694f Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 3eebf4c5808921eb597b45f867aa99ac2fcd8113 7b1856c9018a854fb8728829ae2f0e44194fc690 Package: barriers-dbgsym Source: barriers Version: 1.8.1-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 159 Depends: barriers (= 1.8.1-1) Filename: amd64/barriers-dbgsym_1.8.1-1_amd64.deb Size: 134132 MD5sum: 48e9718b79dc47540916b2109ff1d60a SHA1: 0e1e8724ba9b60befee6f00cf08531da3a5bfaf9 SHA256: 2e52caffa0e4d2b831d04a26f2606df65967021022cb0d997f866bb3a2143c71 Section: debug Priority: optional Description: debug symbols for barriers Build-Ids: 50c57e6125ff767a7379f62c4b55a3f91a5cd210 877779cb81eb962068a1839b21b9c7550d94cf05 Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: i386 Maintainer: Maho Nakata Installed-Size: 98141 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.4), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: i386/mlapack-dev_0.8.1-2_i386.deb Size: 18724412 MD5sum: 7898b27f4df3173e216a362f3d939eb2 SHA1: a7e82ee4f23585ac0dae28010a2f810e0fce0a6e SHA256: 52cb9d90b767e85cb9551322b83a1cd4d9e2ec8980a063ef0021da1dfb380cd6 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 107928 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 19485616 MD5sum: 65c997839c6557f44828ea73e8a19db2 SHA1: b5163fba6a6d707df8c120ba4c40c8aeaead0c77 SHA256: 9d00a8aa825d9b64cf80b894ea372200769c52ca0b9c867070415dba3a96447f Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: mlapack-dev-dbgsym Source: mlapack Version: 0.8.1-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Maho Nakata Installed-Size: 106093 Depends: mlapack-dev (= 0.8.1-2) Filename: i386/mlapack-dev-dbgsym_0.8.1-2_i386.deb Size: 104896092 MD5sum: 2546ade701d5aa6126062f74c3414e3e SHA1: 09f237dae16135194e2efcab988633efcc24f1ae SHA256: c0af8ca7ba40bcf6bd6e538b8d65d2e7393f6d638b3812d84a5ca0f8ebec6f2b Section: debug Priority: optional Description: debug symbols for mlapack-dev Build-Ids: 0290126a422ece0ea0ceea3e0fc8c5b5fa0e02d4 03bbf0cf03501296d7eea18e04068d2def9f60aa 05fcb5efd81a5db7f27b957d44c15b440ebc66a1 10d722d692b8b1a1e9f1fcdc30aa748e5c1ed635 24c6b99da94a38e46e13f9885debb232ea361366 2a4bf6614d416d2771a6093ba50cb6b73e906fa3 350dea6f468ecfa8eb6f12586cc5be2cf8e1fdaa 4291ae958efc4dd506b102c56fb986be5bfc26df 4860ed7752a9c8bd689991452d20120e009b847a 4c7cc0255d04e946460f5d3f94b710dc814776f4 760e297fef7bdcaa334947f8f4a09f9c0ce125e1 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functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: i386 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: i386/perl-rna-barrier_1.8.1-1_i386.deb Size: 7524 MD5sum: 6ab0797df2fae921780f0d4f00f06c63 SHA1: 3cb5ff90eb3367baa3dea90ec35630a4f3b011fa SHA256: f86534924e6f21f61a8673b72aae11ba5e2deacd391ecf3fd7fec7135d502166 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 28 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 7524 MD5sum: 9550d57ab48fde40a14befe75166c48b SHA1: 8f3ef440cf2a1e6b1f27653c9e1d8799d6080739 SHA256: 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3.11~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.2-1_amd64.deb Size: 2022396 MD5sum: 71659952c0c85fb46e876e9ae3e629d6 SHA1: 8a647d5afc4ccb0e3e241d69558b6e5705058567 SHA256: 43c845f61e409f4a44b902d0d76f7e0828912f31afb7ea4ebce85cb3ece9822d Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: python3-rna-dbgsym Source: viennarna Version: 2.7.2-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 14188 Depends: python3-rna (= 2.7.2-1) Filename: amd64/python3-rna-dbgsym_2.7.2-1_amd64.deb Size: 12802348 MD5sum: 6ff08956cccbd3585361ccd15c123aa2 SHA1: 7f0b6e3e367f08ffd00bb228c7194e2d1e4d3f96 SHA256: 3b0b9692507f3995bbdc3d5febd6a926df6df34f89b8498516b1322436511fe7 Section: debug Priority: optional Description: debug symbols for python3-rna Build-Ids: 7fd279877e5c3f85a69b3a5691bab77c93fafa22 Package: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 37174 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.2-1_amd64.deb Size: 3245628 MD5sum: 91c18fc487858e22efaec5017ef5bb61 SHA1: d69156622c4992590671ed402508dade591916d7 SHA256: 80765b0bd603c115b0da369a026936d2b6195583af75be72818c350f24079d35 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dbgsym Source: viennarna Version: 2.7.2-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 33584 Depends: viennarna (= 2.7.2-1) Filename: amd64/viennarna-dbgsym_2.7.2-1_amd64.deb Size: 29349156 MD5sum: 66f55f639ce6ee02b96283133e6ab5b1 SHA1: d8b586b92b97d7d7edb9009e2ffb4c15480948fd SHA256: f8ecd29fc3e201b2d42592d3aab02c72b61328044b977ff1f630d191fb59f59d Section: debug Priority: optional Description: debug symbols for viennarna Build-Ids: 0d270914b69d72cd7ec1ede1828f303eecb12b5a 0f3b1ccfde852f5aa9f70476b765161aba00801f 28713720b5391d366932e325e0f686a4983a0712 3679bc080de7f6f4ba7854520845c3c279d875e4 3a0407ccc0bbb53bbc72244e812bab1dc5e8ba76 3ac33ff7e323b0dd79f3c56be75b6a5cf6affde9 42f304e656ee503b1abfb8eec4e211e28738621d 4aa004c8f492c0381acc01935ccfcbff479465d1 58fde2157ee0902071ba8d2d57d946c5f44a83c0 59dca815e88e76bcd469d50d49de0d122eaf6525 5ad2de8ee5fd898d6d5af8859a95cc496dd8e250 5e6ddebd9da07efa3387895dcc9bb351b1217a72 646b6c443e35ef03007b009e6904e3e6c8201c2e 649a6db96d814bc4e0208c32addaa936d4624235 713052488ac5523ccc5d8ff0e8e650bd663fcfa6 7a43623335e8ed0fcf0d9a2170b7f63f58f8e53d 7db2c314041bae7a8cd02a2649e522f33e62a765 81f27636e74f3c4e7321c8946a5cd060db35b675 821fc5e28d2f5798cb41ca729f0e51bd9d6c5e2a 8759a71b9fbbf8069afd17b054b05507693c6655 a20ca43045b2a51700787972e8c5aba9082e55c2 a671722d2f9f58167a78d763d1dacfe35db6cbfa a997e217098d55a8e384afbaf2d67c84f418c250 b4a4378a99028ac7ec967d1a238ea9dacf7b4e16 bf83af986664da6ce47410d05089de6157ecd7c3 c0b1db3633ef4800da6da7ac90b1e3411ceb0800 c651f2a483a00019b5ff48605b661aa25fa55594 ccd95d8aa22c95422b47e3bff1dca5fa63d9b0c4 cf023315132abcc872cdbf632b384c37186eeefe d33d6166eddc08dec0a279f0cf53eedaa8279468 e0c9ae7535e274f846a8108561ba722ee389f1ee eddbec0b002b7de41f5648ba052b1f960c5e80ba ef414da99fb09286834d92e57cbad1c8cf1c9e2f fa439e7cb027c4b6abc60298bba434fbc4d6b35e Package: viennarna-dev Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 106961 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.2-1_amd64.deb Size: 32658336 MD5sum: 1a49ea5bc3219f274f1a302fccf24ed3 SHA1: f3685e83812433f363ae9a169c1c386b8c730426 SHA256: 3d706390ec88e36b0b0418b5cab6a3d076b65d76e9be95506a2e048fddc50276 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.2-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 27090 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.2-1_all.deb Size: 12169356 MD5sum: b9fcda00f62f65166a5f1983e417e9b2 SHA1: eff8ced671ce41e0cbf17d309215786416c4f67d SHA256: daaed9a3f91b8a52ab80bb567455db27d7a5dee288fb966983efe6cf32055708 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format