Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 149 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 57204 MD5sum: ed15d6b3a1657a4a01827cacf9b86047 SHA1: b4398a9b4801b959b794c40389c0ebb0bf7656bd SHA256: d79346727eed36e7bd015f20cfff38b6e20dfd6d1dd660d3ebb746822ee89d6f Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 108605 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 22751640 MD5sum: c1f49ed5f4f6d92c9a4b347bb1f8effd SHA1: 17036f1a929b3bbb48507763fdb476d18364dac6 SHA256: a5a95d4fa5346f19b8c755fdbd51f1d9a4bd800dc6936b60f26b359e9a39b6fa Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 10859 Depends: perl, perlapi-5.34.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.0-1_amd64.deb Size: 2132126 MD5sum: b18e223e12c505f5471b5593f723c765 SHA1: 3fafdb195270d62dddee905eef2f6fc922445796 SHA256: 59959391e8cefe65b9a2693d5c2730432cd0ce6ccb1cd4946ff59ce248189d7e Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6620 MD5sum: 77eab6dc2b802c740e2b48ee1459cfab SHA1: 313f34c7c90e19ef645dd2504d69e44bd4adc134 SHA256: a2900b2d8f5f3874e7e15a1457b1f8b1832837d1c9b841db97fa7d9acb43324c Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11025 Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.0-1_amd64.deb Size: 2045476 MD5sum: fe979225494644fb5ea801b4ccf495a3 SHA1: a9239b13eb352b81b7c8ea1b813c148abe413b2c SHA256: f767d40bcf28c05a261f5dd8130595a45edd79a6f7c191083d969e49651de748 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 36785 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.0-1_amd64.deb Size: 3070468 MD5sum: 460ef7c676bb2c548ab3b33bfaf99c42 SHA1: 515d62ff1140e1c9ea8cde18e7f8c4d8e2534230 SHA256: e5ef3b5531490703b7024097ecc7b390d8287702f548072c3c4ed58739616552 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.0-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 95536 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.0-1_amd64.deb Size: 30951520 MD5sum: e22cde33225ba0a839e9313a47efe0db SHA1: 13a70876a7444bbf93a675c2fbadd4b72376a713 SHA256: be7890d49f1c9745a4c145d7c482235998577e4098896241262031b752f923d0 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.0-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 25763 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.0-1_all.deb Size: 11977474 MD5sum: 102dc5614a0477222b0b79798116996c SHA1: ff0d24e113b71552ed703efa0783e45675540e35 SHA256: 56b38cd04212929fa7d2f8ef18f44d4c65da95ccdbf734264ecb40acfcdb5eec Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format