Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 165 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 65012 MD5sum: 9b183bbfb4af6953ce08c4defd1e64e5 SHA1: 31ca9f7c52bbe6ecfc230cb5976a92511b287c6e SHA256: f8467e73d32aa749fead6780fa51967a0822eff78fa299103cef56cd119c9551 Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 106228 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 14), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23716272 MD5sum: 3d7bbb5161bb96eacfab9b65d4d13ee1 SHA1: d96d2bd179d90b3472501c09343f3004715473c5 SHA256: 6c9e016c4c428549a51130d288913d98cd728b70690b23e4ab2c98a2e3e22d13 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12668 Depends: perl (>= 5.40.1-2), perlapi-5.40.1, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.2-1_amd64.deb Size: 2638554 MD5sum: 51354d6aa904152fc7afc30b64197010 SHA1: 92083b0e4f1a248c82af790a50e5aa8ee4c1e58a SHA256: fe94ae11c09df111cf53f267b2d4a78512df56b1eed5e50235c88f596f7c42a2 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6546 MD5sum: b3b28d1d96b4c9f731f59c4a1b17356c SHA1: dd87dad65e3efe1b2a801605e062fff350f55384 SHA256: 15f764067beee16ffdd7467864c0cbdeae8b9f079c647a031763a6eb057d7191 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 12653 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), libstdc++6 (>= 14) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.2-1_amd64.deb Size: 2504990 MD5sum: 2afa318eb47d24aec4912c0d4a7765bd SHA1: e33853af77a68fcceb772b3dc12f0ecc4473d0f3 SHA256: 224f284a644233c2d7070fc352af14ebe9690c86a94de06d947a561a8b9403ac Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 41511 Depends: libgomp1 (>= 4.9), libgsl28 (>= 2.8+dfsg), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 14) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.2-1_amd64.deb Size: 4483280 MD5sum: 6cedd3f9fde8d6848b9de92adcd052f7 SHA1: f088a21428c2a138be0b3660da21a7595f7bfe54 SHA256: 118894c274dc42bd5a0bfe02fee9098a5b387ec2bd0f886ed6b0215b557a2566 Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 111667 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.2-1_amd64.deb Size: 35591468 MD5sum: dfed852536148c0dc20e28b5b8c2d903 SHA1: c4f03e3ac2636deef02b5c19682c140ea5e6dcff SHA256: 9a22d559c1a58deca61cc51553aa024e29583b5a3c8038b24555dd9188c1d5ab Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.2-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 27065 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.2-1_all.deb Size: 12143884 MD5sum: 7fd4ae3f18f433d199299b5741014473 SHA1: 83b5a3baa1b4ea3de88869292a3b119602d089ed SHA256: 8d0d1af37d9a045dcaf67b11da6225647d77564d21107a304485689cdce10067 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format